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Metagenomics applied to surveillance of pathogens and antimicrobial resistance

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The field of metagenomics and whole community sequencing is a promising area to unravel the content of microbial communities and their relationship to disease and antimicrobial resistance in the human population. Bioinformatic tools are extremely important for making sense out of metagenomics data, by estimating the presence of pathogens and antimicrobial resistance determinants in complex samples. Combined with relevant explanatory data, metagenomics is a powerful tool for surveillance. In this course, we teach about the potential of metagenomics for surveillance and give the learners an overview of the steps and considerations in a metagenomics study. After this course, the learners will know: - the difference between the concepts of metagenomics and other microbial genomics - the need to use controls in different steps of a metagenomics study - the advantages of metagenomics for the surveillance of antimicrobial resistance - how sampling design, sample size, sample material and sample handling influence the outcome of a metagenomics study - sample processing for bacterial and viral metagenomics - different sequencing platforms and their possibilities regarding metagenomics - the steps involved in a general metagenomics study, including quality control, mapping to different databases, and read count analysis - the principles behind various tools available for analysis of metagenomics data - how to interpret read classification results - the need for epidemiology in surveillance - the concept of global and integrated surveillance - the challenges for the use of metagenomics in surveillance - the potential of metagenomics for surveillance We look forward to welcoming you !

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Unlock the potential of metagenomics in the surveillance of pathogens and antimicrobial resistance with this comprehensive course, ideal for science and engineering enthusiasts. Guided by industry experts on Coursera, this foundational course dives deep into the world of metagenomics and whole community sequencing, unraveling their roles in understanding microbial communities and their impact on human health. Learners will gain insights into the critical bioinformatic tools necessary for deciphering metagenomics data, enabling the identification of pathogens and resistance determinants in complex samples. The course covers a rich array of topics, from sampling design and processing to sequencing platforms and data analysis, empowering you with the knowledge to conduct and interpret metagenomics studies effectively. Spanning 900 minutes, this engaging course is perfect for those who seek to leverage metagenomics for enhanced surveillance of antimicrobial resistance and disease. Whether you’re a beginner or looking to solidify your foundational understanding, flexible subscription options—Starter and Professional—ensure you can tailor your learning experience to your needs. Join us on this enlightening journey to discover the intricacies of metagenomics and its revolutionary potential in global health surveillance.